Publications

• Drennan, Aydin, Emon, Li, Joy, Barishman, Kim, Wei, Denham, Carrillo, Saif,  A fast, muscle-actuated biohybrid swimming robot, bioRxiv, 2024
• Pattanaik, Varshney, Online Reinforcement Learning with Passive Memory, arXiv
• Anderson, Varshney, Hemmatian, Robles-Granda, Nayak, Wilcox, Zwilling, Kim, Barbey, Human Intelligence and the Connectome are Driven by Structural Brain Network Control, bioRxiv
• Pagan-Diaz, Kilacarslan, Wester, Rahman, Aydin, Gapinske, Kim, Buoros, Saif, Bashir, Engineering 3D neuronal networks with directional endogenous neuronal plasticity pathways, bioRxiv
• Dou, Hong, Li, Chan, Bhosale, Aydin, Juarez, Saif, Chamorro, Gazzola, An in-vitro living system for streaming flow rectification, arXiv, 2022

Journal Articles:

• Huang, Upadhyay, Ahn, Sakakura, Pagan-Diaz, Cho, Weiss, Huang, Mitchell, Li, Tan, Deng, Ellis-Mohr, Dou, Zhang, Kang, Chen, Sweedler, Im, Bashir, Chung, Popescu, Gillette, Gazzola, Kong, Neuronal innervation regulates the secretion of neurotrophic myokines and exosomes from skeletal muscle, PNAS, 2024
• Tekinalp, Naughton, Kim, Halder, Gillette, Mehta, Kier, Gazzola, Topology, dynamics, and control of a muscle-architected soft arm, PNAS, 2024
• Zhao, Gribkova, Shen, Cui, Naughton, Liu, Seo, Tong, Gazzola, Gillette, Zhao, Highly stretchable and customizable microneedle electrode arrays for intramuscular electromyography, Science Advances, 2024
• Mestre, Astobizaf, Webster-Wood, Ryan, Saif, Ethics and responsibility in biohybrid robotics research, PNAS, 2024
• Joya, Nall, Emon, Lee, Barishman, Ahmed, Rahman, Selvin, Saif, Synapses without tension fail to fire in an in vitro network of hippocampal neurons, PNAS, 2024
• Varley, Havert, Fosque, Alipour, Weerawongphrom, Naganobori, O’Shea, Pope, Beggs, The serotonergic psychedelic N,N-dipropyltryptamine alters information-processing dynamics in in vitro cortical neural circuits, Network Neuroscience, 2024
• Salners, Dahmen, Beggs, Simple model for the prediction of seizure durations, Physical Review E, 2024
• Zhang, Dou, Kim, Upadhyay, Havert, Kang, Kazemi, Huang, Aydin, Huang, Rahman, Ellis-Mohr, Noblet, Lim, Chung, Gritton, Saif, Kong, Beggs, Gazzola, 'Mind in Vitro' platforms:  Versatile, scalable, robust, and open solutions to interfacing with living neurons, Advanced Science, 2024
• Reichhardt, Regev, Dahmen, Okuma, Reichhardt, Reversible to irreversible transitions in periodic driven many body systems and future directions for classical and quantum systems, Physical Review Research, 2023
• Salners, Avila, Nicholson, Myers, Beggs, and Dahmen.  Recurrent Activity in neuronal avalanches, Scientific Reports, 2023
• Kim, Yang, Zhang, Li, Vazquez-Guardado, Park, Wang, Efimov, Dou, Wang, Park, Luan, Ni, Kim, Baek, Xie, Zhao, Gazzola, Rogers, Bashir, Remote control of miniature robots integrating biological muscles and battery-free wireless optoelectronics, Science Robotics, 2023
• Reichhardt, Regev, Dahmen, Reversible to irreversible transitions in periodic driven many body systems and future directions for classical and quantum systems, Physical Review Research, 2023
• Bhosale, Viswanathan, Giridar, Upadhyay, Parthasarathy, Tejaswin, Gazzola, Multicurvature Viscous streaming:  Flow topology and particle manipulation, PNAS, 2022

Conference Proceedings:

• Gressmann, Chen, Xie, Dowden, Amato, Rauchwerger, A primer on in-vitro biological neural networks, Workshop on Machine Learning with new Compute Paradigms, NeurIPS, 2024
• Gressmann, Rauchwerger, Learning to harness in-vitro biological neural networks, ACM SIGPLAN International Conference on Systems, Programming, Languages and Applications: Software for Humanity (SPLASH), 2024
• Varshney, Schutt-Aine, Rakheja, Ghose, Co-Design Methodologies for Integrating Small Organism-Inspired Chiplets, DOE Neuromorphic Computing for Science Workshop, Bethesda, Maryland, 12-13 September 2024
• Ellis-Mohr, Gazzola, Varshney, Synthetic Neurocomputers: Advancing Scientific Research through Computing with Living Neurons, DOE Analog Computing for Science Workshop, Bethesda, Maryland, 11-13 September 2024
• Ellis-Mohr, Varshney, Directed Information Flow in Computing Systems with Living Neurons, Proceedings of the IEEE International Symposium on Information Theory Workshops, Athens, Greece, 7-12 July 2024
• Naik, Arnold, Varshney, Modeling Clinical Symptoms of Cognitive Decline in Neurodegenerative Disease as Faulty Computing, Proceedings of the IEEE International Symposium on Information Theory Workshops, Athens, Greece, 7-12 July 2024

Books:

• Beggs, The Cortex and the Critical Point First,  MIT Press, 2022